PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016356P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 387aa    MW: 44377.1 Da    PI: 7.0815
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016356P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3971.2e-3067170199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsef 90 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed+ g+ W+++++y+ +s++yv+tkGW++Fvk+++L++gD+v F++  +r++ 
  MELO3C016356P1  67 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPlHRNQD 161
                     89****************************66677899*************************************************54345666 PP

                     ..EEEEE-S CS
              B3  91 elvvkvfrk 99 
                     ++++ ++r+
  MELO3C016356P1 162 RFFIDWRRR 170
                     679999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-4062171IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-2964165IPR015300DNA-binding pseudobarrel domain
CDDcd100179.32E-2465154No hitNo description
SMARTSM010191.2E-1967171IPR003340B3 DNA binding domain
PROSITE profilePS5086314.63567171IPR003340B3 DNA binding domain
PfamPF023626.7E-2867170IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDDFASSSSR FHHHDYYNNK DRRIRDFDDE QQQRKQQQDQ EMEEESCNNN SSNNNNCSIF  60
VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSSSN EKGLLLNFED RCGKLWRFRY  120
SYWTSSQSYV MTKGWSRFVK DKRLDAGDIV SFQRPLHRNQ DRFFIDWRRR PPHPAVDMPF  180
HFHRHDGGTS AAQFPPPPPP HHHFQLHSQW NNNPVATPLS LQRDHVLHLP QYNNNVSLFH  240
NTYNHHHHHH NRYLDGSYGG ASVFYHLRSP IAPPQIESVP VVVDGNGGNG TGGGSGIGRT  300
SAAKTTLRLF GVDMECEVSD DECDVATTSK TMTSSSQFHV YNGMPMPMLT PMTMQMPTSN  360
DNISTMEFFE KGKSSMSSMS SFDFGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-446417011117DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818730.0LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452034.10.0PREDICTED: B3 domain-containing transcription factor NGA2-like
RefseqXP_008452035.10.0PREDICTED: B3 domain-containing transcription factor NGA2-like
RefseqXP_008452036.10.0PREDICTED: B3 domain-containing transcription factor NGA2-like
SwissprotO827993e-66NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A0A0KZM60.0A0A0A0KZM6_CUCSA; Uncharacterized protein
STRINGVIT_02s0025g03000.t015e-71(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.19e-61B3 family protein